Provenance
Public source and introducing commit for each idea already in flymsg. Dates are the commit dates. Sources are published papers, preprints, or public repositories. This table is built from the git history and the existing docs.
A feature enters this table when its commit is on main. The changelog is the
release note. This table is the citation.
| Date | Idea / feature | Public source | Commit |
|---|---|---|---|
| 2026-09-21 | MaleCNS v1.0 loader (fetch / build); traced-neuron graph |
Berg et al., Cell 189, 5504–5526 (2026). doi:10.1016/j.cell.2026.08.015 | 1919375 |
| 2026-09-21 | Whole-CNS current-based LIF; Poisson stimulus; info / path / sim |
Shiu et al., Nature 634, 210–219 (2024). doi:10.1038/s41586-024-07763-9; code philshiu/Drosophila_brain_model (MIT) | 1919375 |
| 2026-09-21 | Fast synapse sign from predicted transmitter (ACh +, GABA/Glu/His −, modulators 0) | Shiu et al. 2024 (same as the model); GluCl / HisCl as in that paper | 1919375 |
| 2026-09-21 | Validation battery on known circuits with size-matched controls | Shiu et al. 2024; von Reyn et al., Nat. Neurosci. 17, 962–970 (2014). doi:10.1038/nn.3741; Ache et al., Curr. Biol. 29, 1073–1081 (2019). doi:10.1016/j.cub.2019.01.079; King & Wyman, J. Neurocytol. 9, 753–770 (1980). doi:10.1007/BF01205017; von Philipsborn et al., Neuron 69, 509–522 (2011). doi:10.1016/j.neuron.2011.01.011; Gordon & Scott, Neuron 61, 373–384 (2009). doi:10.1016/j.neuron.2008.12.033 | 10a5afd |
| 2026-09-21 | P1 as pC1 subtypes whose synonyms include pMP4/pMP-e | Yu et al., Curr. Biol. 20, 1602–1614 (2010). doi:10.1016/j.cub.2010.08.025; Cachero et al., Curr. Biol. 20, 1589–1601 (2010). doi:10.1016/j.cub.2010.07.045 | 10a5afd |
| 2026-09-21 | Criterion v2: reliable spikes, specificity ratio, stability | thresholds stated in docs/validation.md before the run; commit that locked the ranking rule |
fc5c332 |
| 2026-09-21 | Optional spike-triggered threshold (th_jump) |
standard spike-frequency adaptation; not a measured fly parameter. Used while w_syn stayed at the FAFB value |
b6dc609 |
| 2026-09-21 | Browser view of neuron surfaces, skeletons and neuropils | three.js (MIT); geometry from the public MaleCNS volumes in Berg et al. 2026 | 0b8f4e5 |
| 2026-09-21 | Stream source-resolution meshes from the public volumes (no local geometry in the export) | Berg et al. 2026 data release; three.js Draco loader | 5c065c8 |
| 2026-09-21 | Engine follows the published brian2 schedule; stimulated neurons fire at the input rate | Shiu et al. 2024, repository model.py at commit 91bdd1e |
3ca2fbe |
| 2026-09-21 | Criterion v3: latency order along a chain; dose-response | feed-forward sensorimotor chains (von Reyn 2014; von Philipsborn 2011); Shiu et al. 2024 sugar dose (~80 % of peak at 100 Hz) | 3ca2fbe |
| 2026-09-21 | Sugar GRNs = right LB3b + LB3c (two agreeing lines) | Tastekin et al., bioRxiv (2025). doi:10.1101/2025.08.25.671814; Shiu et al. 2024 FAFB sugar set | 3ca2fbe |
| 2026-09-21 | --dataset fafb: FlyWire v783 in the same schema |
Dorkenwald et al., Nature 634, 124–138 (2024). doi:10.1038/s41586-024-07558-y; Schlegel et al., Nature 634, 139–152 (2024). doi:10.1038/s41586-024-07686-5; Matsliah et al., Nature 634, 166–180 (2024). doi:10.1038/s41586-024-07981-1; Shiu repository commit 91bdd1e |
3ca2fbe |
| 2026-09-21 | Synapse-density ratio between MaleCNS and FAFB; scale w_syn |
comparison of the two public reconstructions (Berg et al. 2026; Dorkenwald et al. 2024); method in docs/comparison.md |
3ca2fbe |
| 2026-09-21 | Dimorphic / fru-dsx share among responders vs a superclass-matched null | sex annotations in Berg et al. 2026; fruitless courtship circuit (von Philipsborn 2011) | 3ca2fbe |
| 2026-09-21 | Giant Fiber chemical component compared with shak-B² following |
Blagburn et al., J. Comp. Neurol. 404, 449–458 (1999). PMID 9987990; Allen & Murphey, Eur. J. Neurosci. 26, 439–445 (2007). doi:10.1111/j.1460-9568.2007.05686.x | 3ca2fbe |
| 2026-09-21 | Criterion v4: class-matched sensory control; bitter → MN9 negative case | Shiu et al. 2024, Fig. 3 (bitter suppresses proboscis extension) | 771b32a |
| 2026-09-21 | Pre-registered model selection (select-model) and 10-seed battery |
rule written in docs/validation.md before the run |
771b32a |
| 2026-09-21 | Silencing a set of neurons vs a size-matched null | leave-one-set-out / permutation test; empirical p with +1 smoothing | 771b32a |
| 2026-09-22 | Default w_syn = 0.275 / 1.43, no adaptive threshold (replication of B−) |
Shiu et al. 2024 weight; density ratio from the MaleCNS–FAFB comparison; rule fixed before the replication | 771e116 |
| 2026-09-22 | Compiled LIF kernel with a NumPy oracle | same equations as Shiu et al. 2024; tests/reference_sim.py |
771e116 |
| 2026-09-22 | FAFB LB3 split into male subtypes; MN9 per part | Tastekin et al. 2025; Shiu et al. 2024 sugar set | 771e116 |
| 2026-09-22 | Reconstruction audit of bilateral types | completeness check on the public tables in Berg et al. 2026 | 6414c94 |
| 2026-09-22 | MIT licence, CITATION.cff (no DOI), CI |
MIT License; Citation File Format | 771e116 |
| 2026-09-22 | T1 / T2 silencing protocol (1,000 matched nulls) | rule written in docs/dimorphism.md before the run |
bc2bc3a |
| 2026-09-23 | T1 / T2 results; v0.5 loop half rejected | same protocol; findings kept in docs/validation.md |
f91a777 |
| 2026-09-23 | compare regenerates the male–female tables |
Berg et al. 2026; Dorkenwald / Schlegel / Matsliah 2024; Shiu et al. 2024 | 208dee1 |
| 2026-09-23 | T3 pre-registered (IN03B024 / vMS12 route) | follow-up of T2, written before the run in docs/dimorphism.md |
4c7c08a |
| 2026-10-11 | N1: one degree-preserving shuffle, criterion v4 on both graphs | Maslov & Sneppen, Science 296, 910–913 (2002). doi:10.1126/science.1065103; Newman, SIAM Rev. 45, 167–256 (2003). doi:10.1137/S003614450342480; Shiu et al. 2024 | ea70773 |
| 2026-10-11 | T3 results (1,000 matched-responder nulls) | protocol of 2026-09-23 | 702381a |
| 2026-10-11 | T4 pre-registered (AVLP717m), not run | written in docs/dimorphism.md before any confirmatory draw |
37f48a7 |
| 2026-10-11 | GitHub Pages site from the README and docs | contents already in the repository | f886761 |
| 2026-10-11 | Multi-draw null families, run manifests, versioned preregistration | Brunton et al., bioRxiv (2026). doi:10.64898/2026.03.20.713233; Bargmann, BioEssays 34, 458–465 (2012). doi:10.1002/bies.201100185; Maslov & Sneppen 2002; Newman 2003; Rubinov & Sporns, NeuroImage 52, 1059–1069 (2010). doi:10.1016/j.neuroimage.2009.10.003 | bf9924a |
| 2026-10-11 | T4 result: silencing AVLP717m drops pIP10 after P1 | protocol written in docs/dimorphism.md before the run |
b07dd62 |
| 2026-10-11 | Held-out manifest, frozen before the run (ORN_DM1 → DM1_lPN decides) | Couto, Alenius & Dickson, Curr. Biol. 15, 1535–1547 (2005). doi:10.1016/j.cub.2005.07.034; Kazama & Wilson, Neuron 58, 401–413 (2008). doi:10.1016/j.neuron.2008.02.030; Suh et al., Nature 431, 854–859 (2004). doi:10.1038/nature02980; Jones et al., Nature 445, 86–90 (2007). doi:10.1038/nature05466. Rule in validation/benchmarks.yaml |
51b5305 |
| 2026-10-11 | Held-out result: ORN_DM1 → DM1_lPN fails specific and stability | same protocol; finding kept in docs/benchmarks.md. The reported ORN_V case does not decide |
b3e1859 |
| 2026-10-11 | Held-out sensitivity corners, both FAIL | same protocol; finding kept in docs/benchmarks.md. Neither corner replaces the scored result |
23c99df |
| 2026-10-11 | One-bit looming-jump protocol, frozen before the run | rule in validation/behavior.yaml; circuit already cited in docs/behavior.md |
96cee3b |
| 2026-10-11 | Closed loop: calibration feasibility FAIL on silence | same protocol; finding kept in docs/behavior.md. Takeoff latency does not decide |
e0b794a |
| 2026-10-11 | No biological extension adopted | decision in docs/model.md. The gap-junction numbers stay those already in docs/validation.md |
d4a2914 |
| 2026-10-11 | TTMn_R spike raster for the one-bit loop | times of the v0.8.6 run, drawn in docs/img/looming-jump.png |
7dc7a1d |
| 2026-10-11 | Extension queue closed as blocked | decision in docs/model.md. Issues #10 and #11 add no module |
d493c0a |
| 2026-10-11 | No eligible held-out behavior | decision in docs/validation.md and docs/benchmarks.md. No inventory row is promoted |
3c7bcf7 |
| 2026-10-12 | Status prose aligned with the closed record | wording in docs/validation.md, docs/model.md, docs/behavior.md and docs/benchmarks.md |
daefb45 |
| 2026-10-12 | No scientific task is queued | decision in docs/validation.md |
35d7a7c |
| 2026-10-12 | actions/setup-node 7.1.0 | pin in .github/workflows/tests.yml. Node stays 24 |
43bb246 |
| 2026-10-12 | numba 0.68.0 and llvmlite 0.50.0 | lock in uv.lock. The scored runs were not repeated; their manifests stay on numba 0.67.0 |
7beecec |
| 2026-10-12 | Numeric lock recorded | v0.8.13 records the numba 0.68.0 lock. The scored runs were not repeated | 32ba973 |
| 2026-10-12 | Two documentary issues | #19 records the FlyBody re-read at d015e9b. #20 keeps the residual TTMn_R partner unnamed. No run |
bdd7783 |
| 2026-10-12 | Authored motor map, every row unmapped | validation/motor_map.yaml. No published source names a MaleCNS motor neuron with a FlyBody actuator. No run |
bb1b7e4 |
| 2026-10-12 | Residual TTMn_R scan pre-registered (version 1) | validation/silence_scan.yaml; candidates by rule, screen, fresh-seed confirmation against the T2/T3 null |
7bacb61 |
| 2026-10-12 | Scan runner committed before the run | flymsg silence-scan --run |
6709f13 |
| 2026-10-12 | Scan version 3 (replication on seeds 30–32) locked before its run | validation/silence_scan.yaml v3; runs start from a commit on main |
1bbf60e |
| 2026-10-12 | Doc figures as SVG and the scan replays on the site | scripts/build_figures.py draws docs/img/*.svg from run outputs; scripts/build_live_scenes.py exports the scan arms (seed 0) |
v0.8.40 |
| 2026-10-12 | Archived run outputs in results/; the one-bit raster redrawn as SVG by script |
scripts/archive_results.py; scripts/build_figures.py reads results/ |
v0.8.41 |
| 2026-10-12 | Partner follow-up locked before its run (left mirror, direct drive) | validation/partner_followup.yaml v1; the mirror check on seeds 0–2 disclosed in it |
39b53a5 |
| 2026-10-13 | KC → MBON11 depression locked before its run (optional rule) | Hige et al. 2015, doi:10.1016/j.neuron.2015.11.003 (Fig 1, 3, S4, S6); validation/mb_plasticity.yaml v1 |
ce20fce |
| 2026-10-13 | Kenyon cell sparseness diagnostic locked before its run | Manoim et al. 2022 (KC → KC via mAChR-B); Turner et al. 2008; Honegger et al. 2011; Campbell et al. 2013; validation/kc_sparseness.yaml v1 |
b096b4a |
| 2026-10-13 | Measured viewing direction for every optic-lobe column | Zhao et al. 2025, doi:10.1038/s41586-025-09276-5; Nern et al. 2025, doi:10.1038/s41586-025-08746-0; reiserlab/eyemap_T4 at 99d2a43 (GPL-3.0), fetched, not redistributed |
413a4c8 |
| 2026-10-13 | Looming disk coverage per column | von Reyn et al. 2014, doi:10.1038/nn.3741; the acceptance angle is stated by the lock | 7bf55ae |
| 2026-10-13 | Graded photoreceptor input (eye.photoreceptor_kicks) |
gain stated by the caller; integer kicks reproduce the Poisson run spike for spike | 490edb7 |
| 2026-10-13 | DoOR odor as one response per MaleCNS ORN type | Münch & Galizia 2016, doi:10.1038/srep21841; ropensci/DoOR.data at db323a4 (CC BY-SA), fetched, not redistributed |
ec15377 |
| 2026-10-13 | Kenyon cell sparseness v1 result: not_recurrence | protocol of b096b4a; finding kept in docs/model.md |
f5cd4b7 |
| 2026-10-13 | Kenyon cell v2 lock: cholinergic local neuron → PN removed | Yaksi & Wilson 2010, Neuron 67, 1034–1045. doi:10.1016/j.neuron.2010.08.041 | 374309e |
| 2026-10-13 | Kenyon cell v3 lock: Hige odors as DoOR vectors, with a lower bound | Hige et al. 2015, doi:10.1016/j.neuron.2015.11.003; Münch & Galizia 2016, doi:10.1038/srep21841 | c1cf896 |
| 2026-10-13 | Partner follow-up v1 result: left mirror replicates; DNp06 alone suffices | protocol of 39b53a5; finding kept in docs/behavior.md |
0510027 |
| 2026-10-13 | T4/T5 direction selectivity locked before its run | Maisak et al. 2013, doi:10.1038/nature12320; Lappalainen et al. 2024, doi:10.1038/s41586-024-07939-3; validation/t4t5.yaml v1 |
0c574f5 |
| 2026-10-13 | T4/T5 v1 result: neither | same protocol; finding kept in docs/eye.md |
d874f81 |
| 2026-10-13 | TTM twitch on NeuroMechFly, jump locked before its run | Zumstein et al. 2004, doi:10.1242/jeb.01181; Allen & Murphey 2007, doi:10.1111/j.1460-9568.2007.05686.x; validation/jump3d.yaml v1 |
c05878d |
| 2026-10-13 | NeuroMechFly jump v1 result: short | same protocol; finding kept in docs/embodiment.md |
3ed5ca8 |
| 2026-10-13 | Graded (non-spiking) neurons; T4/T5 v2 locked over a release envelope | Juusola et al. 2016, doi:10.3791/54142; Zheng et al. 2006, doi:10.1085/jgp.200509470; validation/t4t5.yaml v2 |
1ea7cd9 |
| 2026-10-13 | Electrical synapses; Kenyon cell v4 scans eLN–PN coupling | Kazama & Wilson 2009, doi:10.1038/nn.2376; sim.Gap stays off unless a lock names it |
b1116af |
| 2026-10-13 | Kenyon cell sparseness v4 result: none | protocol of b1116af; subthreshold coupling drains PNs; finding kept in docs/model.md |
9a52fe2 |
| 2026-10-13 | Connectome and NeuroMechFly in one loop; input cut at takeoff | M0 clock; spikes before the cut match the open-loop run | 78b6c9d |
| 2026-10-13 | Spikelets and asymmetric junctions | Yaksi & Wilson 2010, Neuron 67, 1034–1045. doi:10.1016/j.neuron.2010.08.041; a spike crosses only when a lock sets spike_mv and spike_ms (one value or one per neuron; 0: that neuron's spikes do not cross). The two sides of a junction may differ |
936000d |
| 2026-10-13 | Kenyon cell sparseness v5 locked before its run | Yaksi & Wilson 2010 Fig. 4C/4F; Kazama & Wilson 2009 Fig. 7d; validation/kc_sparseness.yaml v5, seeds 86–88; no run |
00aff9c |
| 2026-10-13 | Continuous refractory clamp for new electrical configurations | None: an engineering correction under docs/adr-gap-refractory.md; registered locks keep their integrator |
409bb34 |
| 2026-10-13 | Per-neuron membranes (sim.Membrane), off by default |
None: per-neuron values come only from a lock that sources them | 48c58d1 |
| 2026-10-13 | Postsynaptic weight scale; neuron surface areas from the meshes | MaleCNS v1.0 meshes (Berg et al. 2026); the density rule is tested by validation/weight_rule.yaml against Liu et al. 2022 |
a130380 |
| 2026-10-13 | MANC muscle cited for each MaleCNS motor neuron | Cheong, Eichler, Stürner et al. 2024, eLife 13:RP96084, doi:10.7554/eLife.96084, Supplementary file 3 (sha256 pinned) | 1234d53 |
| 2026-10-13 | Synapse weight rule (count against density) locked before its run | Liu et al. 2022 Table S3 (57 pairs of six LHN types matched to MaleCNS) and Table S2; validation/weight_rule.yaml v1, bootstrap seed 139; no MaleCNS count or area computed |
3252dbc |
| 2026-10-13 | Kenyon cell sparseness v6 locked before its run | Eckstein et al. 2024 STAR Methods and Fig. S5F (lLN2T_abc as the cholinergic eLNs; lLN1_bc neighbouring); validation/kc_sparseness.yaml v6, seeds 89–91; no run |
dbbfcf2 |
| 2026-10-13 | Kenyon cell sparseness v7 locked: v6 with the boundary reset, qualified | scripts/qualify_boundary_reset.py, docs/evidence/kc-boundary-qualification-2026-10-13.json; validation/kc_sparseness.yaml v7, seeds 92–94; v6 interrupted after its uncoupled arms (not read); #155 |
45c0641 |
| 2026-10-13 | T4/T5 v3 locked before its run: graded medulla inputs of T4 | Groschner et al. 2022, doi:10.1038/s41586-022-04428-3, Fig. 3a, data Edmond doi:10.17617/3.8G v1.0 (CC BY 4.0), fetched by sha256, not redistributed; Behnia et al. 2014 Fig. 3B/3E; validation/t4t5.yaml v3, seed 94; no run |
406f622 |
| 2026-10-14 | Evidence records for sourced parameters (SF1) | The sources each record cites; validation/evidence.yaml, flymsg.evidence |
0525d93 |
| 2026-10-14 | Taylor solver for the continuous clamp (flymsg.gap/continuous-clamp-taylor-v1) |
None: a truncated Taylor action with a float64 roundoff bound, qualified against the dense maps (docs/evidence/gap-taylor-qualification-2026-10-14.json); ADR accepted 2026-10-14 |
38f560f |
| 2026-10-14 | Kenyon cell sparseness v8 locked: v7 under the continuous clamp by the Taylor action | scripts/qualify_taylor.py, docs/evidence/gap-taylor-qualification-2026-10-14.json; validation/kc_sparseness.yaml v8, seeds 95–97; v7 result read before the lock |
ad7b71e |
| 2026-10-14 | T4/T5 v4 locked before its run: dark-anchored medulla, lamina gain, measured delays | Behnia et al. 2014, doi:10.1038/nature13427 (PMC4243710) Fig. 3B, 3E; Groschner et al. 2022; validation/t4t5.yaml v4, seed 98 |
8d0660b |
| 2026-10-14 | T4/T5 v3 result: robust neither | Groschner et al. 2022 (CC BY 4.0) voltages; validation/t4t5.yaml v3, seed 94; finding kept in docs/eye.md |
2d0d344 |
| 2026-10-14 | Kenyon cell sparseness v8 result: v7 replicates under the exact clamp | validation/kc_sparseness.yaml v8, seeds 95–97; finding kept in docs/model.md |
b2161be |
| 2026-10-14 | Timestep convergence locked (SF2) and run: converged at 0.1 ms | None: a numerical check on the live defaults; validation/convergence.yaml v1, seeds 0–4 |
7c4d34d, c26f47c |
| 2026-10-14 | Pulse vs sine song benchmark locked before its run (#36) | Pacheco et al. 2021, doi:10.1038/s41593-020-00743-y, Supp. Table 2, Methods; data doi:10.34770/gv6w-5351 (CC BY 4.0); MaleCNS syn-partners significant-only; Yamakoshi et al. 2025 data 10.17632/29hpr3nrrv; validation/song.yaml v1 |
2c86f71 |
| 2026-10-15 | Looming → giant fiber timing locked before its data were downloaded (what an agent had seen recorded) (#34) | Dombrovski et al. 2025, doi:10.1038/s41586-025-09037-4, Methods, Extended Data Fig. 8; data Zenodo 10.5281/zenodo.14983850 (CC BY 4.0); Jang et al. 2023, doi:10.1242/jeb.244790, Methods; validation/gf_looming.yaml v1 |
0579ad8 |
| 2026-10-15 | Series S GPU parity of the native lane (12 version-1 fixtures, bit for bit) | None: the CPU oracle; docs/evidence/series-s-gpu-parity-2026-10-15.json |
c7170cb |
| 2026-10-15 | Series S worker lifecycle: cancel, suspension with checkpoint, bit-for-bit resume, throughput | None: the CPU oracle; docs/evidence/series-s-lifecycle-2026-10-15.json |
b0abffe |
| 2026-10-15 | Series S full-connectome throughput: event-driven delivery, bit for bit | None: the CPU oracle; docs/evidence/series-s-full-connectome-2026-10-15.json |
dff96ca |
| 2026-10-15 | Series S exact float32 on the GPU (subnormals) and worker dashboard | None: the CPU oracle; docs/evidence/series-s-full-connectome-2026-10-15.json (long_run) |
2c07195 |
| 2026-10-15 | Series S batch jobs: a whole battery bit for bit with sim.run | None: the CPU oracle; docs/evidence/series-s-battery-2026-10-15.json |
f2f544c |
| 2026-10-15 | Looming to giant fiber timing v1 result: uninformative, the no-go (the model's giant fibers fire in every cell) | validation/gf_looming.yaml v1, seeds 340–344; results/gf_looming/v1; the recordings were not opened |
0579ad8 |
| 2026-10-15 | Looming to giant fiber timing v2 result: uninformative (the flies' interval holds the onset slope) | validation/gf_looming.yaml v2, seeds 350–354; results/gf_looming/v2; Dombrovski et al. 2025 control recordings (Zenodo 10.5281/zenodo.14983850, CC BY 4.0), opened after the model's no-go |
e5f6732 |
| 2026-10-15 | Looming to giant fiber timing v2 locked: passive giant fibers | validation/gf_looming.yaml v2; v1's result and a model-only probe (seed 9000), no data value |
21ce984 |
| 2026-10-15 | T4/T5 v4 result: robust neither | Groschner et al. 2022, Behnia et al. 2014 (the lock's sources); validation/t4t5.yaml v4, seed 98; finding kept in docs/eye.md |
111e3c5 |
| 2026-10-15 | Simple baselines locked (SF2): the battery against 199 degree-preserving shuffles | None: a structural baseline on the live defaults; validation/baselines.yaml v1 |
2f130fa |
| 2026-10-14 | Replication package: index, operator guide, claims audit (SF5) | The archived manifests; docs/replication.md, docs/evidence/replication-index.json |
e4ca5f1 |
| 2026-10-14 | Faster per-neuron membranes, bit-identical | None: an engineering change, oracle-tested | 111e3c5 |
| 2026-10-14 | Graded potentials in the 3D replay; eye-on scene | The T4/T5 lock's measured ranges (Groschner et al. 2022) set the glow scale | e7355eb |
| 2026-10-14 | Sensorimotor environment plan | Card & Dickinson 2008, von Reyn et al. 2014 and 2017, Ache et al. 2019 (as cited there); docs/sensorimotor-environment-plan.md |
7da5e93 |
| 2026-10-14 | Optional WebXR observer | W3C WebXR Device API; three.js WebXR; docs/adr-virtual-experimental-environment.md |
67106cc |
| 2026-10-15 | APL claw contrast locked before its run (#85) | Prisco et al. 2021, doi:10.7554/eLife.74172, Figure 4B, Figure 4-figure supplement 1; validation/apl_claws.yaml v1 |
fdef643 |
| 2026-10-15 | APL claw contrast v1 result: uninformative (the no-go: KCs below rest with APL, all spiking without) | validation/apl_claws.yaml v1, seeds 420–424; results/apl-claws/v1.executions/b914035a…/output/ |
07b04d7 |
| 2026-10-15 | Pulse vs sine song v1 result: uninformative (the no-go; the data were never opened) | validation/song.yaml v1, seeds 360–364, 99 shuffles; results/song/v1 |
a0e517c |
| 2026-10-15 | Simple baselines v1 result: all 7 positive responses specific against 199 shuffles | validation/baselines.yaml v1, seeds 0–4, shuffles 4000–4198; results/baselines/v1.executions/f89ed1c3…/output/ |
0528794 |
| 2026-10-16 | Series S sparse counts: a whole battery bit for bit, 180 s end to end | None: the CPU oracle; docs/evidence/series-s-battery-sparse-2026-10-16.json |
21aec12 |
| 2026-10-16 | Series S battery timing by phase; worker lists its batch outputs | None: the CPU oracle; docs/evidence/series-s-battery-phases-2026-10-16.json |
ab38c57 |
| 2026-10-16 | Series S GPU parity of version-2 fixtures (60, plus the 12 version-1), bit for bit | None: the CPU oracle; docs/evidence/series-s-gpu-parity-v2-2026-10-16.json |
this PR |
| 2026-10-16 | Weak-pathway metrics and the identifiability re-read locked (SF2, #148) | None: numerical checks on the live defaults; validation/path_metrics.yaml v1, seeds 5000–5004; validation/identifiability.yaml v1 re-reads results/sensitivity/v1 |
e6a041e |
| 2026-10-16 | Weak-pathway metrics v1: latency not converged (sugar MN9) | None: the run from e6a041e; results/path-metrics/v1.executions/0c616b34…/output/. The identifiability classes are the re-read of results/sensitivity/v1, scored false |
e6a041e |
The MaleCNS annotation and weight tables are used under CC-BY 4.0 as stated by Berg et al. 2026. A public GPL-3.0 repository publishes processing code for that dataset; flymsg cites the paper and does not copy that code.
FAFB connectivity used with --dataset fafb comes from the Shiu et al. 2024
repository (MIT) and the public FlyWire annotation table (citations above).
flymsg does not redistribute those files.